(SIMBIOS) Physics-Based Simulation of Biological Structures
Stanford University
Stanford, CA
Co-Director: Dr. Russ Altman
Co-Director: Scott Delp


Email Dr. Jennie Larkin at NHLBI, NIH; Phone 301-435-0513


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Event Title


Physics-based Simulation of Biological Structures

Description

An overview of research at Simbios, followed by a Roundtable discussion

Date July 19, 2006
Time 9:00– 11:00+ a.m.
Location

NIH Campus, Bethesda MD
Natcher Conference Center (lower level)
Conference Room G1/G2

NIH Host Simbios NIH Lead Science Officer : Dr. Jennie Larkin, NHLBI/NIH
Targeted Audience All are welcome
Summary

This workshop, organized by the NIH National Center for Simulation of Biological Structures (Simbios) -- one of seven NIH Roadmap National Centers for Biomedical Computing -- consists of four parts.

1. Scientific objectives.
Four driving biological problems will be discussed. These include RNA folding, myosin dynamics, cardiovascular dynamics, and neuromuscular biomechanics.

2. SimTK simulation toolkit.
Software features, functionality, availability, documentation, user testing, and accuracy will be discussed. Software features presented will include advanced capabilities for modeling the geometry and physics of biological systems – as well as integrating and comparing simulation results with experimental data.

3. Infrastructure for the Biosimulation Community
The function and success of the distributed development system www.simtk.org

4. Dissemination, Training & Collaboration Efforts
Biomedical Computation Review, a magazine devoted to biocomputation science and tools
Simbiome an inventory of high-quality commercial and academic bio-simulation tools
Curriculum and training material for biomedical scientists and students.
Opportunities for collaborating with Simbios.

Simbios Dissemination Booklet; pdf (4 MB)

Simbios Participants Russ Altman, co-director
Scott Delp, co-director
Michael Sherman, chief software architect
Jeannette Schmidt, executive director
Paul Mitiguy, dissemination director
Alain Laederach, RNA-folding
Jung-Chi Lao, myosin dynamics
Mary O'Connell, cardiovascualr dynamics
Jon Dugan, Simbiome
Agenda

Simbios: Successes, objectives, and challenges in biosimulation

9:00 - 9:40 a.m. DBP Program: (RNA Folding, Myosin Dynamics, Neuromuscular Biomechanics Cardiovascular Dynamics
9:40 - 9:50 a.m. Break
Simbios: Infrastructure, simulation technology, and dissemination
9:50 - 10:05 a.m. SimTK simulation toolkit - roadmap
10:05 - 10:15 a.m. Infrastructure for the Biosimulation Community (www.simtk.org)
10:15 - 10:20 a.m. Biomedical Computation Review
10:20 - 10:30 a.m. Simbiome
10:30 - 10:40 a.m. Curriculum and training material for biomedical scientists and students
10:40 - 10:50 a.m. Collaborating with Simbios
10:50 - 11:00 a.m. Discussion
11:00 - 1:00 Optional follow-on for continued discussions with Simbios representatives
Event Website https://simtk.org/xml/index.xml
Accessibility Needs    Individuals with disabilities who need sign language interpreters and/or reasonable accommodation to participate in this event should contact Jennifer Villani at 301-451-6446 or villanij@mail.nih.gov or through the Federal Relay 1-800-877-8339. Requests should be made at least five days in advance of the meeting.  
updated: KL/08/22/2006/10:30 am