Poster abstracts and full posters organized by content

• Natural Language Processing
• Modeling, Simulation, Computational Tools
• Microarray Data and Pathways in Network Analysis
• Ontologies
• Translational medicine
• Imaging
• Dissemination/Education

Demonstration abstracts
Poster abstracts organized by author
Poster abstracts organized by keyword

POSTER ABSTRACTS AND FULL POSTERS ORGANIZED BY CONTENT

NATURAL LANGUAGE PROCESSING

I2B2 AIRWAYS DISEASE DBP: PATIENTS, PHENOTYPES,
MODELS, AND DATA VIEWER
Abstract: L-1; Full poster in pdf (110 kb)
Lazarus R, Murphy S, Zeng Q, Sordo M, Wei L-J, Fuhlbrigge A,
Signorovitch J, Churchill S, Weiss S, Kohane IS

FIRST SHARED-TASK FOR CHALLENGES IN NATURAL LANGUAGE
PROCESSING FOR CLINICAL DATA
Abstract: L-2; Full poster in pdf (100 kb)
Uzuner O, Kohane I, Szolovits P

MiMI: MICHIGAN MOLECULAR INTERACTIONS
Abstract: L-3; Full poster in pdf (1 mb)
Chapman A, Jayapandian M, Yu C, Tarcea G, Jagadish HV

INTEGRATED BIOMEDICAL DATABASES: MOLECULAR BIOLOGY
INTEGRATION, MICROARRAY, AND NATURAL LANGUAGE PROCESSING
Abstract: L-4; Full poster in pdf (5 mb)
Phillips J, Santos C, Gao J, States DJ

MODELING, SIMULATION, COMPUTATIONAL TOOLS

REPRESENTATION, MODELING, ANALYSIS AND VISUALIZATION
OF BIOLOGICAL SHAPE, FORM AND SIZE
Abstract: M-1; Full poster in jpg (2.55 mb)
CCB Poster Abstract Presenter: Dinov ID

THE ELECTROSTATIC ENVIRONMENT, NATIVE STATE TOPOLOGY
AND INITIAL CONFORMATION ENSEMBLE DISTINCTLY GUIDE RNA
THROUGH PREFERRED FOLDING PATHWAYS
Abstract: M-2; Full poster in ppt (6 mb)
Laederac A, Shcherbakova I, Brenowitz M, Altman RB

USING SUBJECT-SPECIFIC SIMULATIONS TO UNDERSTAND MUSCLE
FUNCTION DURING WALKING
Abstract: M-3; Full poster in pdf (5 mb)
Anderson FC, Arnold AS, Thelen DG, Liu MQ, Delp SL

IDENTIFYING THE POWER STROKE STEP OF MYOSIN V USING
A NOVEL DWELL-TIME DISTRIBUTION ANALYSIS
Abstract: M-4; Full poster in pdf (200 kb)
Liao J-C, Parker D, Purcell TJ, Spudich JA, Delp SL

HEALTHGRID M-5
Kratz M, Bilofsky H, Legre Y

MULTIGENIC DISSECTION AND PROGNOSTIC MODELING
OF COMPLEX TRAITS
Abstract: M-6; Full poster in pdf (1 mb)
Ramoni MF

CARDIOVASCULAR DYNAMICS: IMAGE-BASED MODELING
OF AORTIC BIOMECHANICS FROM NANO- TO MACRO-SCALES
Abstract: M-7; Full poster in pdf (5 mb)
Taylor CA, Draney-Blomme MT, Figueroa CA, O'Connell, MK, Feenstra P, Xu C, Zarins C

MICROARRAY DATA AND PATHWAYS IN NETWORK ANALYSIS

I2B2 DRIVING BIOLOGY PROJECT 3 HUNTINGTON’S DISEASE
Abstract: N-1; Full poster in ppt (1 mb)
Lee J-M, Cashorali T, Anderson MA, Shen Y, Kohane I, MacDonald M, Gusella J

BIOINFORMATICS IN TYPE 1 DIABETES: OXIDATIVE STRESS
AND COMPLICATIONS
Abstract: N-2; Full poster in pdf (5 mb)
Wiggin TD, Sullivan KA, Kretzler M, Feldman EL

PROFILING CONDITION-SPECIFIC, GENOME-WIDE REGULATION OF MRNA STABILITY IN YEAST
Abstract: N-3; Full poster in pdf (1 mb)
Foat BC, Houshmandi SS, Olivas WM, Bussemaker HJ

TRANSCRIPTION FACTOR CENTRIC DISCOVERY OF REGULATORY ELEMENTS IN MAMMALIAN GENOMES USING ALIGNMENT-INDEPENDENT CONSERVATION MAPS
Abstract: N-4; Full poster in pdf (100 kb)
Banerjee N, Califano A

MINDY: AN ALGORITHM FOR THE GENOME-WIDE DISCOVERY OF
MODULATORS OF TRANSCRIPTIONAL INTERACTIONS
Abstract: N-5; Full poster in ppt (500 kb)
Wang K, Nemenman I, Banerjee N, Margolin A, Califano A

THE NATIONAL CENTER FOR BIOMEDICAL ONTOLOGY
Abstract: N-6; Full poster in ppt (2 mb)
Musen M, Lewis S, Misra S, Rubin D

INTEGRATIVE MOLECULAR CONCEPTS ANALYSIS OF
PROSTATE CANCER PROGRESSION
Abstract: N-7; Full poster in ppt (7 mb)
Tomlins SA, Mehra R, Rhodes DR, Cao X, Wang L, Wei JT, Rubin MA,
Pienta KJ, Shah RB, Chinnaiyan AM

PREDICTING BIOLOGICAL NETWORKS AND THEIR EVOLUTIONARY DESIGN N-8
Wiggins CH

SNP FUNCTION PORTAL: A WEB DATABASE FOR EXPLORING THE
FUNCTION IMPLICATION OF SNP ALLELES
Abstract: N-9; Full poster in pdf (4 mb)
Wang P, Dai M, Xuan W, McEachin R, Jackson A, Scott L,
Athey B, Watson SJ, Meng F

BRINGING PATIENT POPULATIONS TO THE INTEGROME
Abstract: N-10; Full poster in pdf (250 kb)
Kohane IS, Butte A, Valtchinov V, Murphy SN

SAGA: A FAST AND FLEXIBLE GRAPH MATCHING TOOL
Abstract: N-11; Full poster in pdf (3 mb)
Tian Y, McEachin RC, Patel JM

ONTOLOGIES

OBD & PHENOTE: TOOLS FOR STORAGE AND ANNOTATION OF
BIOMEDICAL DATA USING ONTOLOGIES
Abstract: O-1; Full poster in pdf (1 mb)
Washington N, Mungall C, Shu SQ, Gibson M, Day-Richter J, Misra S, Lewis S.

THE OBO FOUNDRY – A FAMILY OF HIGH QUALITY INTEROPERABLE
REFERENCE ONTOLOGIES
Abstract: O-2; Full poster in ppt (2 mb)
Neuhaus F, Smith B

ONTOLOGY RESOURCES FOR THE BIOMEDICAL COMMUNITY
Abstract: O-3; Full poster in ppt (3 mb)
Rubin D, Shah N, Vembakam A, Murphy L, Noy N, Musen M

THE PHENOGO DATABASE SYSTEM: ANCHORING AND ORGANIZING GENE ONTOLOGY ANNOTATIONS TOGETHER WITH CELL TYPE ONTOLOGY O-4
Sam L, Borlawsky T, Li J, Liu Y, Friedman C, Lussier YA

LEXBIO – SHARED VOCABULARY RESOURCES FOR THE NCBO
Abstract: O-5; Full poster in ppt (4 mb)
Buntrock J, Solbrig H, Johnson T, Chute C

NCBO DRIVING BIOLOGICAL PROJECT: ANALYSIS OF HIV TRIALS
Abstract: O-6; Full poster in ppt (500 kb)
Sim I, Carini S, Olasov B

INTERACTIVE VIEWS FOR NAVIGATING ONTOLOGIES AND DATA ANNOTATIONS
Abstract: O-7; Full poster in ppt (3 mb)
Callendar C, Storey M-A, d’Entremont T, Falconer S, Hernandez M-E

ONTOLOGIES LINK HUMAN DISEASES TO ANIMAL MODELS
Abstract: O-8; Full poster in ppt (1 mb)
Ashburner MA, Gibson M, Lewis S, Mungall C, Segerdell E,
Westerfield M

TRANSLATIONAL MEDICINE

THE I2B2 HIVE: A SOFTWARE ARCHITECTURE FOR THE CLINICAL RESEARCH CHART
Abstract: T-1; Full poster in pdf (2 mgs)
Chueh HC, Berkowicz, DA, Murphy, SN, Kohane IS

INTEGRATION OF CLINICAL AND GENETIC DATA IN THE I2B2 ARCHITECTURE
Abstract: T-2; Full poster in pdf (400 k)
Murphy SN, Chueh HC, Berkowitz DA, Glaser J, Kohane IS

IMAGING

SHAPE OPTIMIZING DIFFEOMORPHISMS FOR COMPUTATIONAL BIOLOGY
Abstract: I-1; Full poster in pdf (1.5 mb)
Gee J, Avants B, Toga A

DIFFUSION IMAGE ANALYSIS IN NA-MIC
Abstract: I-2 ; Full poster in pdf (3 mb) or in ppt (3 mb)
Kikinis R, Shenton M, Kubicki M, Bouix S, Niethammer M,
Dreusicke M, Markant D, O’Donnell L, Westin, C-F

SPATIAL REGULARIZATION FOR fMRI DETECTION
Abstract: I-3; Full poster in pdf (100 kb) or in ppt (100 kb)
Kikinis R, Ou W, Golland P, Wells W-III, Richter C, Liu H,
Plesniak W

NA-MIC KIT
Abstract: I-4; Full poster in pdf (2 mb) or in ppt (2 mb)
Kikinis R, Schroeder W, Lorensen, WE, Miller JV, Pieper S

STATISTICAL SHAPE ANALYSIS OF BRAIN STRUCTURES
Abstract: I-5; Full poster in pdf (2 mb) or in ppt (6 mb)
Styner M, Oguz I, Gerig G, Nain D, Tannenbaum A, Golland P,
Bouix S, Niethammer M, Fletcher T, Whitaker R

DISSEMINATION, EDUCATION

BIOMEDICAL COMPUTATION REVIEW
Abstract: D-1; Full poster in pdf (23 mb)
Paik D, Miller K

SIMBIOME: A STRUCTURED RESOURCE INVENTORY SYSTEM
Abstract: D-2; Full poster in pdf (3 mb)
Dugan J, Katz W

DEMONSTRATION ABSTRACTS

DASHBOARDS: A BRIEF HISTORY OF DART S-1
Lorensen B, Blezek D

SOFTWARE TOOLS AND METHODS: A TOUR OF THE NCIBI RESOURCES S-2
Cavalcoli JD, States DJ, Jagadish HV, Patel J, Meng F, Reich M, Athey BD

POSTER ABSTRACTS ORGANIZED BY AUTHOR

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

POSTER ABSTRACTS ORGANIZED ACCORDING TO KEYWORDS

Annotation O-1
Aorta M-7
ARE (antioxidant response element) N-2
Atlases I-1
Best Practices O-2
Bioinformatics M-6, N-6, O-2, O-3, O-8, T-2
Biological Shape M-1
Biomarker N-9
Biomechanics M-7
Biomedical Computation D-1
Biomedical Informatics M-5
BioNLP L-4
Brain I-1
Brain Mapping M-1
Brain Morphometry I-5
Cardiovascular M-7
Cell O-4
Clinical Records L-2
Clinical Research Chart T-1
Comparative Genomics N-4
Complex traits M-6
Computation M-5
Computational Neuroscience M-1
Computational Tools M-1
Context O-4
Data Release L-2
Databases N-6, O-3, O-8
Diffusion Image Analysis I-2
Disease O-8
Dissemination D-1, D-2
DNA Binding Site Analysis N-4
DNA Microarrays N-3
Dwell-time M-4
Education D-1, D-2
Evidence-based Medicine O-6
Fiber Segmentation I-2
First-passage Time M-4
Folding M-2
Framework O-7
Functional MRI I-3
Gene Ontology O-4
Genetics L-1, N-9
Genomic M-6
Genomics N-10
Grid M-5
HapMap N-9
Huntington’s Disease N-1
Image-based M-7
Imaging M-1
Indexing N-11
Integrome N-10
International M-5
Knowledge Base O-6
Machine Learning N-8
Magazine D-1
Markov Random Fields I-3
Mechanics M-3
Microarray N-1
Model Organism O-8
Molecular Motor M-4
Morphometry I-1
Motifs N-8
Multiscale M-7
Muscle Function M-3
Myosin M-4
Natural Language Processing L-1, L-2, L-3, N-11
Navigation O-7
Network Reverse Engineering N-4
Networks N-8
Neuroimaging I-5
Neuromuscular M-3
Normalization I-1
Ontologies N-6, O-1, O-2, O-3, O-5, O-6, O-7, O-8
Open Source Software I-4
Pathway M-2
Pathway-mapping N-2
Pattern Discovery N-4
Pharmacogenetics L-1
Phenotype O-1, L-1
Polyglutamine N-1
Populations N-10
Post-transcriptional Regulatory Networks N-3
Power Stroke M-4
Probability L-3
Provenance-tracking L-3
RCTs O-6
Regulatory Networks N-5
Relational Databases L-4
Resource Inventory D-2
Resveratrol N-2
Review D-1
Ribozyme M-2
RNA M-2
Salt M-2
Sequence Annotation L-4
Shape Analysis I-5
Simulation M-3, M-7
SNP N-9
Software Architecture T-1
Spatial Regularization I-3
Structured Data D-2
Subgraph matching N-11
Subject-specific M-3, M-7
Systems Biology N-4, N-5
Text Mining O-4
Transcriptional Regulation N-4, N-8
Translational Medicine N-10
Triplet Repeat N-1
Visualization O-6, O-7
Visualization Tools L-1
Vocabulary Services O-5
Walking M-3
Web Services T-1

Scientific Poster and Software Demonstration Abstract and Presentation Guidelines

The NIH National Centers for Biomedical Computing (NCBC) All Hands Meeting organizing committee invites each NCBC Center to present five to seven scientific/technical abstracts for its poster presentations and software demonstrations to be presented during the All Hands Meeting to be held July 17-19, 2006 at the NIH Lister Hill Center in Bethesda, MD.

Deadline for scientific/technical abstract submissions is June 16, 2006.

PLEASE NOTE: Abstracts submitted for poster presentation will be reprinted for distribution in the meeting program book and posted with other meeting documents on the public NIH BISTIC web site. Actual poster presentations will be included on a CD or DVD to be distributed to the Centers and others after the meeting. Authors should consider whether their sensitive and unpublished findings are appropriate for such presentation.

Selection Criteria
Each Center will select and peer review the scientific/technical abstracts and posters representing its Center. The All Hands Meeting organizing committee will review the abstracts for content and appropriate groupings for presentation purposes.

Guidelines for Poster and Demonstration Abstract Preparation (please see Digital Biology symposium abstracts for format examples: http://www.bisti.nih.gov/2003meeting/abstracts/)
1. The abstract cover page must be double spaced and must contain the following information centered on the page:

• Title of abstract
• Presenting author name (last name first), institution affiliation, e-mail and mailing addresses, phone and fax numbers
• Three to five key words that describe the topic or topics addressed in the abstract

2. The abstract must be in a word processing format that is compatible with MS Word for Windows.
3. The abstract must be at least one-half page and no more than one page (8.5 by 11 inches) long with 1-inch margins, single-column layout, and single spaced using 12-point Times Roman or similar font. Word processing files should be saved with fonts embedded if that option is available. The total space covered by figures and tables must not exceed one-third of the page area.
4. The title should be in all capital letters followed by author name(s), last name(s) first. On a new line, list author institution(s), with their corresponding city, and state or country, relating this information with superscripts to author names when not the same for all authors. A superscript asterisk should indicate the presenting author, and his/her e-mail address should be listed as footnote.
5. The last line of the abstract should indicate relevant Federal grant support, if any.

Guidelines for Poster and Demonstration Abstract Submission
1. Abstracts must be submitted by e-mail as described below. Your submission will be acknowledged by e-mail 2 to 3 days after receipt. Questions concerning the status of submitted abstracts should be sent to ahmposterdemo@blseamon.com.
2. Using e-mail, send your cover page and abstract as a single file attached to your e-mail, to ahmposterdemo@blseamon.com. In the subject line, please type “Poster Abstract for 2006 NCBC All Hands Meeting," or "Demonstration Abstract for 2006 NCBC All Hands Meeting," depending upon the type of abstract. Please make every attempt to send your online submission from the same e-mail address where you want to receive the confirmation reply.

Poster Presentations
1. Please note that there are no plans to issue an erratum for the meeting program book or web site posting, so submitters are requested to make the title and content of their abstract consistent with their actual poster presentations.
2. Posters will be exhibited during July 17 and 18. A dedicated poster session time has been scheduled for July 17 between 3:00 and 5:30 p.m. We request that a Center representative familiar with poster content be present at the posters during that time.
3. For planning purposes, poster space will be approximately 4 by 8 feet, Please plan to use only the poster board space. No electrical outlets, tables, or chairs will be provided for poster displays.
4. Recommendations to enhance the readability of posters include using 2- to 3-inch title lettering, numbered figures, and 14-point caption text.
5. Presenters are requested to submit their poster presentations in power point or pdf format by July 24 for inclusion on the CD of meeting materials to be prepared and distributed at the conclusion of the meeting. Using e-mail, send your final presentation as a ppt or pdf single file attached to your e-mail, to ahmposterdemo@blseamon.com. In the subject line, please type “Poster Presentation for 2006 NCBC All Hands Meeting." Please make every attempt to send your online submission from the same e-mail address where you want to receive the confirmation reply

Guidelines for Software Demonstrations

1. Approximately seven tables adjacent to internet and electrical connections will be available during the meeting for demonstrations of software. These tables will be for one-on-one interactions among attendees to demonstrate and discuss software relevant to their work.
2. Those wishing to demonstrate software should submit an abstract to make other attendees aware of the opportunity to interact. Demonstration abstracts should follow the format for poster abstracts.
3. Attendees wishing to demonstrate software are asked to bring their own laptop to use during the demonstration. Those bringing laptops or other electronic devices with them, will need to obtain a property pass from the first floor security guard. The pass will allow the owner to remove the equipment from the building after the meeting and will verify for the guard that the item is not the property of the NLM.

Updated 09/21/2006/1:30pm/KL